Bioinformatics

ABySS

ABySS (Assembly By Short Sequences) is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

AMOS

AMOS is a collection of tools and class interfaces for the assembly of DNA reads.

antiSMASH

antiSMASH is a gene cluster detector.

BamTools

BamTools are a C++ API & command-line toolkit for working with BAM data.

BayeScan

BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations.

Bcftools

Bcftools is a program for variant calling and manipulating VCFs and BCFs.

beagle-lib

beagle-lib is a library of GPU based functions for phylogenetic analysis.

BEAST

BEAST is a phylogenetic analysis program.

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