BEDTools are a set of utilities for genomics analysis.

Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.

A tool to map bisulfite converted sequence reads and determine cytosine methylation states.

BLAST+ searches one or more nucleic acid or protein databases for BLAST+ sequences similar to one or more query sequences of any type. BLAST+ can produce gapped alignments for the matches it finds.

BLAT (the BLAST-Like Alignment Tool) is a software program to identify similarities between DNA sequences and protein sequences.

Bowtie2 is an ultrafast, memory-efficient short read aligner.

BUSCO provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB.